PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03500.1
Common NameLR48_Vigan06g014700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 273aa    MW: 29624.2 Da    PI: 6.799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19142192255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Vang07g03500.1 142 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 192
                     8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-31141200No hitNo description
Gene3DG3DSA:3.30.730.102.4E-32141200IPR001471AP2/ERF domain
PROSITE profilePS5103224.21142200IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-23142202IPR016177DNA-binding domain
SMARTSM003808.2E-39142206IPR001471AP2/ERF domain
PfamPF008471.1E-13142192IPR001471AP2/ERF domain
PRINTSPR003675.4E-11143154IPR001471AP2/ERF domain
PRINTSPR003675.4E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MYEETTYESD LALLDSIRRH LLGDSEDLKF GPPIVNSGNT SLYSRSSSFG RLYPCLSNDW  60
GELPLKEDDS EDMVLYGVLR DAVNLGWVPS LNADSPDSFS SGFVPEVTVK PEPDVFPAPE  120
PVFTPPVVHK DAPAVVPAKG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTFETAEDAA  180
LAYDRAAYRM RGSRALLNFP LRINSGEPEP VRVTSKRASP EPSSSSSSES GSSVKRRKKV  240
VGSTVTAPSG LRTGQVGSQV AQCTRAEQLL VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-44138207170ATERF1
3gcc_A5e-44138207170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157259.11e-172hypothetical protein PHAVU_002G055700g
SwissprotO803372e-84EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0L9UQ450.0A0A0L9UQ45_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T5790.0A0A0S3T579_PHAAN; Uncharacterized protein
STRINGGLYMA01G41520.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-69ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]